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PhD Student

Jörg Franke

Postal address
Institut für Informatik
Albert-Ludwigs-Universität Freiburg
Sekretariat Hutter/Maschinelles Lernen
Georges-Köhler-Allee 074
79110 Freiburg, Germany
Fax
+49 761 203-74217
Office
Building 53, Room 00-030
GoogleScholarGitHub

OpenSource

Publications

2024

Franke, Jörg; Hefenbrock, Michael; Hutter, Frank

Preserving Principal Subspaces to Reduce Catastrophic Forgetting in Fine-tuning Inproceedings

In: Mathematical and Empirical Understanding of Foundation Models (ME-FoMo) Workshop, 2024.

Patil, Sharat; Runge, Frederic; Franke, Jörg K. H.; Hutter, Frank

Towards Generative RNA Design with Tertiary Interactions Workshop

The Generative and Experimental perspectives in bioMolecular design (GEM) workshop (ICLR 2024), 2024, (Oral Presentation).

Matus, Dominika; Runge, Frederic; Franke, Jörg K. H.; Gerne, Lars; Uhl, Michael; Hutter, Frank; Backofen, Rolf

RNA-Protein Interaction Prediction via Sequence Embeddings Workshop

The Generative and Experimental perspectives in bioMolecular design (GEM) workshop (ICLR 2024), 2024.

2023

Runge, Frederic; Franke, Jörg K. H.; Fertmann, Daniel; Hutter, Frank

Rethinking Performance Measures of RNA Secondary Structure Problems Workshop

Machine Learning for Structural Biology Workshop, (NeruIPS 2023), 2023.

Franke, Jörg K. H.; Hefenbrock, Michael; Koehler, Gregor; Hutter, Frank

New Horizons in Parameter Regularization: A Constraint Approach Inproceedings

In: OPT2023: 15th Annual Workshop on Optimization for Machine Learning, (NeurIPS 2023), 2023.

Franke, Jörg K. H.; Hefenbrock, Michael; Koehler, Gregor; Hutter, Frank

Constrained Parameter Regularization Unpublished

Preprint, arXiv:2311.09058, 2023.

Runge, Frederic; Franke, Jörg K. H.; Hutter, Frank

Towards Automated Design of Riboswitches Workshop

The 2023 ICML Workshop on Computational Biology, 2023.

2022

Franke, Jörg; Runge, Frederic; Hutter, Frank

Probabilistic Transformer: Modelling Ambiguities and Distributions for RNA Folding and Molecule Design Inproceedings

In: Oh, Alice H.; Agarwal, Alekh; Belgrave, Danielle; Cho, Kyunghyun (Ed.): Advances in Neural Information Processing Systems (NeurIPS 2022), 2022.

2021

Franke, Jörg K H; Köhler, Gregor; Biedenkapp, André; Hutter, Frank

Sample-Efficient Automated Deep Reinforcement Learning Journal Article

In: International Conference on Learning Representations (ICLR) 2021, 2021.

2020

Stoll, Danny; Franke, Jörg K H; Wagner, Diane; Selg, Simon; Hutter, Frank

Hyperparameter Transfer Across Developer Adjustments Journal Article

In: NeurIPS 4th Workshop on Meta-Learning, 2020.

2019

Franke, Jörg KH; Köhler, Gregor; Awad, Noor; Hutter, Frank

Neural Architecture Evolution in Deep Reinforcement Learning for Continuous Control Journal Article

In: NeurIPS 2019 Workshop on Meta-Learning, 2019.

2018

Bandi, Peter; Geessink, Oscar; Manson, Quirine; Dijk, Marcory Van; Balkenhol, Maschenka; Hermsen, Meyke; Bejnordi, Babak Ehteshami; Lee, Byungjae; Paeng, Kyunghyun; Zhong, Aoxiao; Franke, Jörg; Both, Fabian; others,

From detection of individual metastases to classification of lymph node status at the patient level: the CAMELYON17 challenge Journal Article

In: IEEE transactions on medical imaging, vol. 38, no. 2, pp. 550–560, 2018.

Franke, Jörg; Niehues, Jan; Waibel, Alex

Robust and Scalable Differentiable Neural Computer for Question Answering Inproceedings

In: Proceedings of the Workshop on Machine Reading for Question Answering, pp. 47–59, 2018.

2017

Müller, Markus; Franke, Jörg; Stüker, Sebastian; Waibe, Alex

Improving phoneme set discovery for documenting unwritten languages Journal Article

In: Studientexte zur Sprachkommunikation: Elektronische Sprachsignalverarbeitung 2017, pp. 202–209, 2017.

Müller, Markus; Franke, Jörg; Waibel, Alex; Stüker, Sebastian

Towards phoneme inventory discovery for documentation of unwritten languages Inproceedings

In: 2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), pp. 5200–5204, IEEE 2017.

2016

Franke, Joerg; Mueller, Markus; Hamlaoui, Fatima; Stueker, Sebastian; Waibel, Alex

Phoneme boundary detection using deep bidirectional lstms Inproceedings

In: Speech Communication; 12. ITG Symposium, pp. 1–5, VDE 2016.